Publications
37. Kirkwood, K.I.; Pratt, B.S.; Shulman, N.; Tamura, K.; MacCoss, M.J.; MacLean, B.X.; Baker, E.S. “Utilizing Skyline to analyze lipidomics data containing liquid chromatography, ion mobility spectrometry and mass spectrometry dimensions” Nat. Protoc. 2022.
36. Foster, M.; Rainey, M.; Watson, C.; Dodds, J.N.; Kirkwood, K.I.; Fernández, F.M.; Baker, E.S. “Uncovering PFAS and Other Xenobiotics in the Dark Metabolome Using Ion Mobility Spectrometry, Mass Defect Analysis, and Machine Learning” Environ. Sci. Technol. 2022, 56(12), 9133-9143.
35. Kostelic, M.M.; Hsieh, C.C.; Sanders, H.M.; Zak, C.K.; Ryan, J.P.; Baker, E.S.; Aspinwall, C.A.; Marty, M.T. “Surface Modified Nano-Electrospray Needles Improve Sensitivity for Native Mass Spectrometry” J. Am. Soc. Mass Spectrom. 2022, 33(6), 1031-1037.
34. Zhu, Y.; Schrecke, S.; Tang, S.; Odenkirk, M.T.; Walker, T.; Stover, L.; Lyu, J.; Zhang, T.; Russell, D.; Baker, E.S.; Yan, X.; Laganowsky, A. “Cupric Ions Selectively Modulate TRAAK-Phosphatidylserine Interactions” J. Am. Chem. Soc. 2022, 144(16), 7048-7053.
33. Butler, K.E.; Dodds, J.N.; Flick, F.; Campuzano, I.D.G.; Baker, E.S. “High Resolution Demultiplexing (HRdm) Ion Mobility Spectrometry-Mass Spectrometry for Aspartic and Isoaspartic Acid Determination and Screening” Anal. Chem. 2022, 94(16), 6191-6199.
32. Kirkwood, K.I.; Fleming, J.; Nguyen, H.; Reif, D.M.; Baker, E.S.; Belcher, S.M. “Utilizing Pine Needles to Temporally and Spatially Profile Per- and Polyfluoroalkyl Substances (PFAS)” Environ. Sci. Technol. 2022 56(6), 3441-3451.
31. Hubers-Roman, A.T.; Cordova, A.C.; Rohde, A.M.; Chiu, W.A.; McDonald, T.J.; Wright, F.A.; Dodds, J.N.; Baker, E.S.; Rusyn, I. “Characterization of compositional variability in petroleum substances” Fuel 2022, 317(1), 123547.
30. Rampler, E.; Baker, E.S.; Kirkwood, K.I.; Schwaiger-Haber, M.; Tam, M,; Jones, M.A.; Sherman, M. “Empowering Women and Addressing Underrepresentation in the Field of Mass Spectrometry“ Expert Rev. Proteom. 2022 19(1), 1-3.
29. Dodds, J.N.; Wang, L.; Patti, G.J.; Baker, E.S. “Combining Isotopologue Workflows and Simultaneous Multidimensional Separations to Detect, Identify, and Validate Metabolites in Untargeted Analyses” Anal. Chem. 2022 94(5), 2527-2535.
28. Kirkwood, K.I.; Christopher, M.W.; Burgess, J.L.; Littau, S.R.; Foster, K.; Richey, K.; Pratt, B.S.; Shulman, N.; Tamura, K.; MacCoss, M.J; MacLean, B.X.; Baker, E.S. “Development and Application of Multidimensional Lipid Libraries to Investigate Lipidomic Dysregulation Related to Smoke Inhalation Injury Severity” J. Prot. Res. 2022 21(1), 232-242.
27. Dodds, J.N.; Baker, E.S. “Improving the Speed and Selectivity of Newborn Screening Using Ion Mobility Spectrometry-Mass Spectrometry” Anal Chem. 2021, 95(51), 17094-17102.
26. Valdiviezo, A.; Aly, N.A.; Luo, Y.; Cordova, A.; Casillas, G.; Foster, M.; Baker, E.S.; Rusyn, I. “Analysis of Per- and Polyfluoroalkyl Substances in Houston Ship Channel and Galveston Bay Following a Large-scale Industrial Fire Using Ion Mobility Spectrometry-Mass Spectrometry” J. Environ. Sci. 2022, 115, 350-362.
25. Odenkirk, M.T.; Horman, B.M.; Dodds, J.N.; Patisaul, H.B.; Baker, E.S. “Combining Micropunch Histology and Multidimensional Lipidomic Measurements for In-Depth Tissue Mapping” ACS Meas. Sci. Au 2022, 2(1), 67-75.
24. Aly, NA., Dodds, JN, Luo, YS, Grimm, FA, Foster M, Rusyn I, Baker ES. “Utilizing Ion Mobility Spectrometry-Mass Spectrometry for the Characterization and Detection of Persistent Organic Pollutants and Their Metabolites.” Anal. Bioanal. Chem. 2021.
23. Butler, K.E.; Kalamar, Gowen J., Muddiman, D.C.; Baker, E.S. “Utilizing Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry to Assess INLIGHT Derivatized N-linked Glycans in Biological Samples” Anal. Bioanal. Chem. 2021, s00216.
22. Odenkirk, M.T.; Reif, D.M.; Baker, E.S. “Multiomic Big Data Analysis Challenges: Increasing Confidence in the Interpretation of Artificial Intelligence Assessments” Anal Chem. 2021, 0c04850.
21.
20. Butler, K.E.; Takinami, T.; Rainczuk, A.; Baker, E.S.; Roberts, B.R. “Utilizing Ion Mobility-Mass Spectrometry to Investigate the Unfolding Pathway of Cu/Zn Superoxide Dismutase” Front. Chem. 2021, 9.
19. Odenkirk, M.T.; Stratton, K.G.; Bramer, L.M.; Webb-Robertson, B.-J.M.; Bloodsworth, K.J.; Monroe, M.E.; Burnum-Johnson, K.E.; Baker, E.S. “From Prevention to Disease Perturbations: A Multi-Omic Assessment of Exercise and Myocardial Infarctions.” Biomolecules 2021, 11, 40.
18. Roman‐Hubers, A.T., McDonald, T.J., Baker, E.S., Chiu, W.A. and Rusyn, I. (2021), A comparative analysis of analytical techniques for rapid oil spill identification. Accepted in Environ Toxicol Chem. 2020.
17. J. N. Dodds, N. L. M. Alexander, K. I. Kirkwood, M. R. Foster, Z. R. Hopkins, D. R. U. Knappe, E. S. Baker, “From Pesticides to PFAS: An Evaluation of Recent Targeted and Untargeted Mass Spectrometry Methods for Xenobiotics.” Anal. Chem. 2020, 93(1), 641-656.
16. Y-S. Luo, N. A. Aly, J. McCord, M. J. Strynar,W. A. Chiu, J. N. Dodds, E. S. Baker, I. Rusyn, “Rapid Characterization of Emerging Per- and Polyfluoroalkyl Substances (PFAS) in Aqueous Film-Forming Foams (AFFF) Using Ion Mobility Spectrometry-Mass Spectrometry (IMS-MS).“ Environ. Sci. Technol. 2020, 54(23), 15024-15034.
15. Orwoll, E.S., Wiedrick, J., Nielson, C.M., Jacobs, J., Baker, E.S., Piehowski, P., Petyuk, V., Gao, Y., Shi, T., Smith, R.D., Bauer, D.C., Cummings, S.R., Lapidus, J., “Proteomic assessment of serum biomarkers of longevity in older men.” Aging Cell 2020, 19(11).
14. Odenkirk, M., Zin, P.K, Ash, J.R., Reif, D.M., Fourches, D., Baker, E., “Structural-based connectivity and omic phenotype evaluations (SCOPE): A cheminformatics toolbox for investigating lipidomic changes in complex systems.” Analyst 2020, 145, 7197-7209.
13. Odenkirk MT, Stratton KG, Gritsenko MA, Bramer LM, Webb-Robertson BM, Bloodsworth KJ, Weitz KK, Lipton AK, Monroe ME, Ash JR, Fourches D, Taylor BD, Burnum-Johnson KE, Baker ES, “Unveiling molecular signatures of preeclampsia and gestational diabetes mellitus with multi-omics and innovative cheminformatics visualization tools.” Mol. Omics. 2020, 16(6), 521-532.
12. Jacyln Gowen Kalmar, Karen E. Butler, Erin S. Baker, David C. Muddiman, “Enhanced protocol for quantitative N-linked glycomics analysis using Individuality Normalization when Labeling with Isotopic Glycan Hydrazide Tags (INLIGHT).” Anal. Bioanal. Chem. 2020, 412, 7569-7579.
11. Author links open overlay panelNoor A. Aly, Yu-Syuan Luo, Yina Liu, Gaston Casillas, Thomas J. McDonald, James M. Kaihatu, Mikyoung Jun, Nicholas Ellis, Sarah Gossett, James N. Dodds, Erin S. Baker, Sharmila Bhandari, Weihsueh A. Chiu, Ivan Rusyn, “Temporal and spatial analysis of per and polyfluoroalkyl substances in surface waters of Houston ship channel following a large-scale industrial fire incident.” Environ. Pollut. 2020, 265B.
10. M. T. Soper-Hopper, J. Vandegrift, E. S. Baker, F. Fernandez, “Metabolite collision cross section prediction without energy-minimized structures.” Analyst, 2020, 145, 5414-5418.
9. James N. Dodds, Zachary R. Hopkins, Detlef R. U. Knappe, Erin S. Baker, “Rapid Characterization of Per- and Polyfluoroalkyl Substances (PFAS) by Ion Mobility Spectrometry-Mass Spectrometry (IMS-MS)” Anal. Chem. 2020, 92(6), 4427-4435.
8. Mans Ekelof, James Dodds, Sitora Khodjaniyazova, Kenneth P. Garrard, Erin S. Baker, David C. Muddiman, “Coupling IR-MALDESI with Drift Tube Ion Mobility-Mass Spectrometry for High-Throughput Screening and Imaging Applications” J. Am. Soc. Mass Spectrom. 2020, 31(3), 642-650.
7. Odenkirk, M.T., Baker, E.S. (2020) Utilizing Drift Tube Ion Mobility Spectrometry for the Evaluation of Metabolites and Xenobiotics. In: Paglia G., Astarita G. (eds) Ion Mobility-Mass Spectrometry. Methods in Molecular Biology, vol 2084. Humana, New York, NY.
6. James N. Dodds, Erin S. Baker, “Ion Mobility Spectrometry: Fundamental Concepts, Instrumentation, Applications, and the Road Ahead” J. Am. Soc. Mass Spectrom. 2019, 30(11), 2185-2195.
5. Erin S. Baker, Gary J. Patti, “Perspectives on Data Analysis in Metabolomics: Points of Agreement and Disagreement from the ASMS Fall Workshop” J. Am. Soc. Mass Spectrom.
4. Xueyun Zheng, Francesca B. Smith, Noor A. Aly, Jingwei Cai, Richard D. Smith, Andrew D. Patterson, Erin S. Baker, “Evaluating the Structural Complexity of Isomeric Bile Acids with Ion Mobility Spectrometry” Anal. Bioanal. Chem. 2019, 411, 4673–4682.
3. Kristin E. Burnum-Johnson, Xueyun Zheng, James N. Dodds, Jeremy Ash, Denis Fourches, Carrie D. Nicora, Jason P. Wendler, Thomas O. Metz, Katrina M Waters, Janet K. Jansson, Richard D. Smith, Erin S. Baker, “Ion Mobility Spectrometry and the Omics: Distinguishing Isomers, Isobars, Molecular Classes and Contaminant Ions in Complex Samples” Trends Anal. Chem. 2019, 116, 292-299.
2. Pier-Luc Plante, Elina Francovic-Fontain, Jody C. May, John A. McLean, Erin S. Baker, Francois Laviolette, Mario Marchard, Jacques Corbeil, “Predicting Ion Mobility Collision Cross Sections Using a Deep Neural Network: DeepCCS” Anal. Chem. 2019, 91, 5191-5199.
1. Maria E. Monge, James N. Dodds, Erin S. Baker, Arthur S. Edison, Facundo M. Fernández, “Challenges in Identifying the Dark Molecules of Life” Annu. Rev. Anal. Chem. 2019, 12, 177-199.
Publications prior to NCSU can be found on Google Scholar.